You should read the following discussion and analysis of our financial condition
and results of operations together with our condensed consolidated financial
statements and the related notes appearing elsewhere in this Quarterly Report on
Form 10-Q. Some of the information contained in this discussion and analysis or
set forth elsewhere in this report, including information with respect to our
plans and strategy for our business and related financing, includes
forward-looking statements that involve significant risks and uncertainties. You
should read the "Risk Factors" section in Part II, Item 1A. of this Quarterly
Report on Form 10-Q for a discussion of important factors that could cause our
actual results to differ materially from the results described in or implied by
the forward-looking statements contained in the following discussion and
analysis.

OVERVIEW



We are a late-stage clinical biopharmaceutical company that is developing
deuruxolitinib (which we previously referred to as CTP-543), a novel,
deuterated, oral JAK1/2 inhibitor. We have successfully completed two Phase 3
clinical trials of deuruxolitinib for the treatment of adults with moderate to
severe alopecia areata, a serious autoimmune dermatological disease, and intend
to file an NDA with the FDA in the first half of 2023.

We are conducting pre-commercial activities, with the intent of commercializing
deuruxolitinib in the United States ourselves or with the assistance of
strategic partners. If we are successful in obtaining FDA approval for
deuruxolitinib for the treatment of adults with moderate to severe alopecia
areata, we intend to evaluate deuruxolitinib in younger patients with alopecia
areata and explore expanding deuruxolitinib into additional indications. We are
also assessing both internal and potential in-licensed candidates for pipeline
expansion.

Deuruxolitinib

Deuruxolitinib Opportunity

We believe that the market opportunity to treat alopecia areata within the
United States is significant. Based on a recent large cross-sectional survey
study, it is estimated that the current prevalence of alopecia areata in the
United States may be up to approximately 1.5 million persons (Benigno M.
Clinical, Cosmetic and Investigational Dermatology 2020). The study also
estimates that about 43% of the alopecia areata population in the United States
has 50% or greater loss of scalp hair. Given this prevalence and the substantial
impact of alopecia areata on quality of life, the burden of alopecia areata
within the United States is considerable. We believe that the market opportunity
within the United States could support multiple approved treatments.

Deuruxolitinib is an oral JAK1/2 inhibitor that we are developing for the
treatment of moderate to severe alopecia areata. The FDA has granted
deuruxolitinib Breakthrough Therapy designation for the treatment of adult
patients with moderate to severe alopecia areata and Fast Track designation for
the treatment of alopecia areata. We have successfully completed two Phase 3
clinical trials of deuruxolitinib and intend to file an NDA with the FDA in the
first half of 2023.

Patients who have experienced hair regrowth while taking a JAK inhibitor to
treat their alopecia areata commonly experience hair loss after ceasing to take
the JAK inhibitor (Hogan S. J Clin Aesthet Dermatol. 2019 and Ramírez-Marín H.A.
Drug Des Devel Ther. 2022). As a result, if we are successful in obtaining FDA
approval for deuruxolitinib, we expect that deuruxolitinib will need to be used
continuously in order for patients to maintain the hair that has regrown.

Clinical Development of Deuruxolitinib

We have completed two Phase 3 clinical trials and multiple Phase 2 clinical trials of deuruxolitinib for the treatment of adults with moderate to severe alopecia areata.



Phase 3 clinical trials

We have conducted two Phase 3 clinical trials of deuruxolitinib, THRIVE-AA1 and
THRIVE-AA2. Both trials were double-blind, randomized, placebo-controlled Phase
3 clinical trials evaluating 8 mg twice-daily and 12 mg twice-daily doses of
deuruxolitinib compared to placebo in adult patients with moderate to severe
alopecia areata at sites in the United States, Canada and Europe. Patients
enrolled in both trials were required to have at least 50 percent scalp hair
loss due to alopecia areata, as measured by the Severity of Alopecia Tool, or
SALT. A SALT score of 100 represents total scalp hair loss, whereas a score of 0
represents no scalp hair loss. THRIVE-AA1 enrolled 706 patients, and THRIVE-AA2
enrolled 517 patients.

The primary efficacy endpoint for both trials was the percentage of patients
achieving an absolute SALT score of 20 or less (meaning 20 percent or less scalp
hair loss) at Week 24 of treatment.
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The key secondary endpoints for both trials were the percentage of responders on
a Hair Satisfaction Patient Reported Outcome scale at Week 24 and the percentage
of patients achieving absolute SALT scores of 20 or less at each of Weeks 20,
16, 12 and 8.

THRIVE-AA1

In May 2022, we announced positive topline results from THRIVE-AA1. The primary
efficacy endpoint and all key secondary endpoints for THRIVE-AA1 were met with
statistical significance in both the 8 mg twice-daily and 12 mg twice-daily dose
groups relative to placebo. Treatment with deuruxolitinib was generally well
tolerated in THRIVE-AA1.

The average baseline SALT score across all patients in THRIVE-AA1 was
approximately 85.9 (corresponding to approximately 14% average scalp hair
coverage). A statistically significant proportion of patients treated with
either 8 mg twice-daily or 12 mg twice-daily of deuruxolitinib in THRIVE-AA1
experienced greater scalp regrowth compared to placebo. The proportion of
patients achieving a SALT score of 20 or less at Week 24 of treatment was 41.5
percent in the 12 mg twice-daily dose group and 29.6 percent in the 8 mg
twice-daily dose group, compared to 0.8 percent of patients in the placebo
group. The treatment difference for both dose groups of deuruxolitinib relative
to placebo was statistically significant (p<0.0001).

The safety profile seen with deuruxolitinib in THRIVE-AA1 was consistent with
previous studies. The most common (?5%) side effects in any dose group were
headache, acne, upper respiratory infection, increased creatine kinase levels,
COVID-19 infection and nasopharyngitis. Upper respiratory infections were
greater in the placebo group than in either of the deuruxolitinib dose groups.
No pulmonary embolisms or deep vein thromboses were observed in the trial. One
patient treated with the 8 mg twice-daily dose and one patient treated with the
12 mg twice-daily dose developed herpes zoster (shingles). Serious adverse
events were reported in nine patients, with only one patient (in the 8 mg
twice-daily dose group) having events (2) that were assessed as possibly related
to treatment. Four patients who reported serious adverse events were in the
placebo group.

THRIVE-AA2



In August 2022, we announced positive topline results from THRIVE-AA2. The
primary efficacy endpoint and all key secondary endpoints for THRIVE-AA2 were
met with statistical significance in both the 8 mg twice-daily and 12 mg
twice-daily dose groups relative to placebo. Treatment with deuruxolitinib was
generally well tolerated in THRIVE-AA2.

The average baseline SALT score across all patients in THRIVE-AA2 was
approximately 87.9 (corresponding to approximately 12% average scalp hair
coverage). A statistically significant proportion of patients treated with
either 8 mg twice-daily or 12 mg twice-daily of deuruxolitinib in THRIVE-AA2
experienced greater scalp regrowth compared to placebo. The proportion of
patients achieving a SALT score of 20 or less at Week 24 of treatment was 38.3
percent in the 12 mg twice-daily dose group and 33.0 percent in the 8 mg
twice-daily dose group, compared to 0.8 percent of patients in the placebo
group. The treatment difference for both dose groups of deuruxolitinib relative
to placebo was statistically significant (p<0.0001).

The safety profile seen with deuruxolitinib in THRIVE-AA2 was consistent with
previous studies. The most common (?5%) side effects in any dose group were
COVID-19 infection, nasopharyngitis, increased creatine kinase levels, acne and
headache. No pulmonary embolisms or deep vein thromboses were observed in the
trial. Two patients treated with the 8 mg twice-daily dose and two patients
treated with the 12 mg twice-daily dose developed herpes zoster (shingles). Five
serious adverse events were reported in five patients, with only one event (in
the 8 mg twice-daily dose group) that was assessed as possibly related to
treatment.

Phase 2 clinical trials



In September 2019, we announced results from a Phase 2 double-blind, randomized,
dose-ranging trial to evaluate three sequential doses of deuruxolitinib (4, 8
and 12 mg twice-daily) and a placebo control in 149 patients with moderate to
severe alopecia areata. Patients treated with either 8 mg twice-daily or 12 mg
twice-daily doses of deuruxolitinib met the primary efficacy endpoint with
statistically significant differences (p <0.001) relative to placebo in the
percentage of patients achieving a ? 50% relative change from baseline at 24
weeks. A numerically but not statistically greater percentage of patients
treated with the 4 mg twice-daily dose of deuruxolitinib met the primary
efficacy endpoint, and the 4 mg twice-daily dose was not studied further in our
Phase 3 clinical trials. Treatment with deuruxolitinib was generally well
tolerated. The most common side effects in the 8 mg twice-daily or 12 mg
twice-daily dose groups were headache, nasopharyngitis, upper respiratory tract
infection, acne, nausea and low-density lipoprotein increase. One serious
adverse event was reported in the 12 mg twice-daily dose group as possibly
related to treatment; however, after a brief interruption, treatment continued
and this patient completed the trial. No thromboembolic events were reported
during the trial.

                                       31
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In addition, we completed two Phase 2 clinical trials evaluating twice-daily
dosing of deuruxolitinib compared to once-daily dosing of deuruxolitinib. Based
on the findings from those trials, we utilized the 8 mg twice-daily and 12 mg
twice-daily doses in our Phase 3 clinical trials of deuruxolitinib. The 8 mg
twice-daily and 12 mg twice-daily arms of those studies provided efficacy
comparable to the 8 mg twice-daily and 12 mg twice-daily arms, respectively, of
our Phase 2 dose-ranging trial.

Other clinical trials



Eligible patients from our efficacy and safety studies with deuruxolitinib may
also enroll in one of our open label, long-term extension studies. In July 2021,
we provided an update showing that, relative to our Phase 2 clinical trials of
deuruxolitinib, hair regrowth using the SALT score was maintained or improved in
the great majority of patients through one year of continuous dosing with 12 mg
twice-daily of deuruxolitinib.

Additional clinical trials of deuruxolitinib are also ongoing to support the submission of an NDA, which is currently planned for the first half of 2023.

Earlier-Stage Pipeline

We are currently assessing earlier-stage pipeline candidates as potential development candidates, including a once-daily, modified release formulation of deuruxolitinib.

COLLABORATION PRODUCT CANDIDATES



In addition to our wholly-owned development programs, we have entered into
collaborative arrangements with companies to develop deuterium-modified versions
of their marketed products. Our partners are currently responsible for all
development and future commercialization activities under these arrangements. In
each of these collaborations, the deuterium-modified compound was independently
discovered by us.

For example, in February 2012, we entered into a development and license
agreement with Avanir for the worldwide rights to develop, manufacture and
commercialize AVP-786. AVP-786 is a combination of deudextromethorphan
hydrobromide (d6-DM) and quinidine sulfate (Q), a CYP2D6 inhibitor, being
investigated for the treatment of neurologic and psychiatric disorders. In 2019,
Avanir completed two Phase 3 clinical trials evaluating AVP-786 for the
treatment of agitation associated with dementia of the Alzheimer's type. The
second of the Phase 3 clinical trials did not meet its primary or key secondary
endpoints; however, following additional data analysis, Avanir decided to
continue developing AVP-786 for the treatment of agitation associated with
dementia of the Alzheimer's type. Three additional Phase 3 clinical trials and
an open label, long-term extension study for Alzheimer's agitation are ongoing.
Additionally, Avanir is conducting a Phase 2/3 clinical trial evaluating AVP-786
for the treatment of negative symptoms of schizophrenia. Under the Avanir
Agreement, we received an upfront payment of $2.0 million and have received
milestone payments of $6.0 million. We are eligible to earn up to $37.0 million
in regulatory and commercial launch milestone payments with respect to AVP-786
and up to $125.0 million in sales-based milestone payments. Avanir is also
required to pay us royalties at defined percentages ranging from the mid-single
digits to low double digits below 20% on net sales of licensed products on a
country-by-country basis. The royalty rate is reduced, on a country-by-country
basis, during any period within the royalty term when there is no patent claim
covering the licensed product in the particular country. We sold a portion of
our right to receive these royalties in connection with the 2021 Financing.
Initially, the Investors collectively owned 35% of such royalties, with the
percentage increasing incrementally up to 50% if all of the warrants issued in
connection with the financing are exercised by the Investors. Based on the full
exercise of the First Tranche Warrants, the Investors' collective ownership of
such royalties increased to 42.5%.

ASSET PURCHASE AGREEMENT WITH VERTEX PHARMACEUTICALS FOR CTP-656



In July 2017, we completed the sale of worldwide development and
commercialization rights to CTP-656, now known as VX-561, and other assets
related to the treatment of cystic fibrosis to Vertex. Pursuant to the Vertex
Agreement, we received $160.0 million in cash. Additionally, upon the
achievement of certain milestone events, Vertex agreed to pay us an aggregate of
up to $90.0 million.

In May 2021, we entered into the Vertex Amendment, pursuant to which Vertex paid
us $32.0 million in cash in exchange for the removal of the Milestone
Obligation. As a result of the Vertex Amendment, we are not entitled to receive
any further payments pursuant to the Vertex Agreement, as amended by the Vertex
Amendment.
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COVID-19 PANDEMIC



The COVID-19 pandemic continues to evolve. We could be materially and adversely
affected by the risks, or the public perception of the risks, related to an
epidemic, pandemic or other public health crisis, such as the COVID-19 pandemic,
including, but not limited to, potential delays in our clinical trials or
submission of an NDA. Although restrictions in the United States due to the
COVID-19 pandemic have been lifted, the ultimate extent of the impact of any
epidemic, pandemic or other public health crisis on our business, financial
condition and results of operations will depend on future developments, which
are highly uncertain and subject to change will depend on future developments,
which cannot be accurately predicted. Accordingly, we cannot predict the extent
to which our business, financial condition and results of operations may be
affected by the COVID-19 pandemic, such as the emergence of new variants.

LIQUIDITY AND GOING CONCERN



As of September 30, 2022, we had cash, cash equivalents and investments of
$148.9 million and net working capital of $139.8 million. We have incurred
cumulative net losses of $440.1 million since our inception and require capital
to continue future development activities. We do not have any products approved
for sale and have not generated any revenue from product sales. We have financed
our operations primarily through the public offering and private placement of
our equity, debt financing, funding from collaborations and patent assignments,
asset sales and other arrangements. We expect our expenses to increase in
connection with our ongoing activities, particularly as we seek marketing
approval for deuruxolitinib and conduct our open label, long-term extension
studies and other clinical trials to support the submission of our NDA. For
information regarding our recently completed equity financings, see Notes 12, 13
and 14 in the consolidated financial statements appearing elsewhere in this
Quarterly Report on Form 10-Q.

We are subject to risks common to companies in the biotechnology industry,
including, but not limited to, risks of failure or unsatisfactory results of
nonclinical studies and clinical trials, the need to obtain additional financing
to fund the future development of our pipeline, the need to obtain marketing
approval for our product candidates, the need to successfully commercialize and
gain market acceptance of our product candidates, dependence on key personnel,
protection of proprietary technology, compliance with government regulations,
development by competitors of technological innovations and ability to
transition from pilot-scale manufacturing to large-scale production of products.
We are also subject to larger macroeconomic risks, including stock market
disruptions, rising inflation and interest rates, and other macroeconomic
factors that may affect the cost or availability of raising additional capital.

Under ASC Topic 205-40, Presentation of Financial Statements - Going Concern,
management is required at each reporting period to evaluate whether there are
conditions and events, considered in the aggregate, that raise substantial doubt
about an entity's ability to continue as a going concern within one year after
the date that the financial statements are issued. This evaluation initially
does not take into consideration the potential mitigating effect of management's
plans that have not been fully implemented as of the date the financial
statements are issued. When substantial doubt exists, management evaluates
whether the mitigating effect of our plans sufficiently alleviates the
substantial doubt about our ability to continue as a going concern. The
mitigating effect of management's plans, however, is only considered if both (i)
it is probable that the plans will be effectively implemented within one year
after the date that the financial statements are issued and (ii) it is probable
that the plans, when implemented, will mitigate the relevant conditions or
events that raise substantial doubt about our ability to continue as a going
concern within one year after the date that the financial statements are issued.
Generally, to be considered probable of being effectively implemented, the plans
must have been approved by the board of directors before the date that the
financial statements are issued.

Successful completion of our development programs and, ultimately, the
attainment of profitable operations are dependent upon future events, including
obtaining adequate financing to support our cost structure and operating plan.
Our plans to alleviate our financing requirements include, among other things,
pursuing one or more of the following steps to raise additional capital, none of
which can be guaranteed or are entirely within our control:

•raise funding through the sale of our common or preferred stock; •raise funding through debt financing; and •establish collaborations with potential partners to advance our product pipeline.



Based on our current operating plan, we believe that our current cash, cash
equivalents and investments will allow us to meet our liquidity requirements
through the second quarter of 2023. Our history of significant losses, our
negative cash flows from operations, our limited liquidity resources currently
on hand and our dependence on our ability to obtain additional financing to fund
our operations after the current resources are exhausted, about which there can
be no certainty, have resulted in our
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assessment that there is substantial doubt about our ability to continue as a
going concern for a period of at least twelve months from the issuance date of
this Quarterly Report on Form 10-Q. The accompanying consolidated financial
statements have been prepared on a going concern basis, which contemplates the
realization of assets and the satisfaction of liabilities in the normal course
of business, and do not include any adjustments that may result from the outcome
of this uncertainty.

If we are unable to raise capital when needed or on acceptable terms, or if we
are unable to procure collaboration arrangements to advance our programs, we
would be forced to discontinue some of our operations or develop and implement a
plan to further extend payables, reduce overhead or scale back our current
operating plan until sufficient additional capital is raised to support further
operations. There can be no assurance that such a plan would be successful.
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FINANCIAL OPERATIONS OVERVIEW



Since our inception in 2006, we have devoted substantially all of our resources
to our research and development efforts, including activities to develop our
core capabilities in deuterium chemistry, identify potential product candidates,
undertake nonclinical studies and clinical trials, manufacture clinical trial
material in compliance with current good manufacturing practices, or cGMPs,
provide general and administrative support for these operations and establish
our intellectual property. We have generated an accumulated deficit of $440.1
million since inception through September 30, 2022 and will require substantial
additional capital to fund our ongoing activities. We do not have any products
approved for sale and have not generated any revenue from product sales. We have
financed our operations to date primarily through the public offering and
private placement of our equity, debt financing, funding from collaborations and
patent assignments, asset sales and other arrangements.

Our operating results may fluctuate significantly from year to year, depending
on the timing and magnitude of cash payments received pursuant to collaboration
and licensing arrangements and other agreements and the timing and magnitude of
clinical trial and other development activities under our current development
programs. Substantially all of our net losses have resulted from costs incurred
in connection with our research and development programs and from general and
administrative costs associated with our operations.

We expect to continue to incur significant expenses and increasing operating
losses for at least the next several years. We expect our expenses to increase
in connection with our ongoing activities, particularly as we seek marketing
approval for deuruxolitinib and conduct our open label, long-term extension
studies and other clinical trials to support the submission of our NDA.

We do not expect to generate revenue from product sales unless and until we, or
our collaborators, obtain marketing approval for one or more of our product
candidates, which we expect will take a number of years and is subject to
significant uncertainty. If we obtain, or believe that we are likely to obtain,
marketing approval for any product candidates for which we retain
commercialization rights, and intend to commercialize a product, we expect to
incur significant commercialization expenses related to product sales,
marketing, manufacturing and distribution. We expect to seek to fund our
operations through a combination of equity offerings, debt financings,
collaboration and licensing arrangements and other sources for at least the next
several years. However, we may be unable to raise additional funds or enter into
such other arrangements when needed on favorable terms or at all. Our failure to
raise capital or enter into such other arrangements as and when needed would
force us to delay, limit, reduce or terminate our research and development
programs and could have a material adverse effect on our financial condition and
our ability to develop our products. We will need to generate significant
revenues to achieve sustained profitability, and we may never do so.

Revenue



We have not generated any revenue from the sales of products. All of our revenue
to date has been generated through collaboration, license and research
arrangements with collaborators and nonprofit organizations for the development
and commercialization of product candidates, a patent assignment agreement and
asset sales.

The terms of these agreements may include one or more of the following types of
payments: non-refundable license fees, payments for research and development
activities, payments based on the achievement of specified milestones, payment
of license exercise or option fees relating to product candidates and royalties
on any net product sales. To date, we have received non-refundable upfront
payments, several milestone payments, payments for research and development
services provided to our collaborators, a change in control payment pursuant to
a patent assignment agreement and payments for the sale of assets. However, we
have not yet earned any license exercise or option fees, sales-based milestone
payments or royalty revenue as a result of product sales.

In the future, we will seek to generate revenue from a combination of product
sales and milestone payments and royalties on product sales in connection with
our current collaborations or other collaborations we may enter into.

Research and development expenses

Research and development expenses consist primarily of costs incurred for the development of our product candidates, which include:

•employee-related expenses, including salary, benefits, travel and stock-based compensation expense;


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•expenses incurred under agreements with contract research organizations and
investigative sites that conduct our clinical trials;
•the cost of acquiring, developing and manufacturing clinical trial materials;
•facilities, depreciation and other expenses, which include direct and allocated
expenses for rent and maintenance of facilities, insurance and other supplies;
•platform-related lab expenses, which includes costs related to synthesis,
analysis and in vitro and in vivo characterization of deuterated compounds to
support the selection and progression of potential product candidates;
•expenses related to consultants and advisors; and
•costs associated with nonclinical activities and regulatory operations.

Research and development costs are expensed as incurred. Costs for certain
development activities are recognized based on an evaluation of the progress to
completion of specific tasks using information and data provided to us by our
vendors and our clinical sites.

A significant portion of our research and development costs have been external
costs, which we track on a program-by-program basis. These external costs
include fees paid to investigators, consultants, central laboratories and
contract research organizations in connection with our clinical trials, and
costs related to acquiring and manufacturing clinical trial materials. Our
internal research and development costs are primarily personnel-related costs,
depreciation and other indirect costs. We do not track our internal research and
development expenses on a program-by-program basis, as they are deployed across
multiple projects under development.

The successful development of any of our product candidates is highly uncertain.
As such, at this time, we cannot reasonably predict with certainty the duration
and completion costs of the current or future clinical trials of any of our
product candidates or if, when or to what extent we will generate revenues from
the commercialization and sale of any of our product candidates that obtain
marketing approval. We may never succeed in achieving marketing approval for any
of our product candidates. The duration, costs and timing of clinical trials and
development of our product candidates will depend on a variety of factors,
including:

•the scope and rate of progress of our ongoing as well as any additional
clinical trials and other research and development activities;
•successful enrollment in and completion of clinical trials, including on
account of the COVID-19 pandemic and its impact on clinical trial sites;
•conduct of and results from ongoing as well as any additional clinical trials
and research and development activities;
•significant and changing government regulation;
•the terms and timing and receipt of any marketing approvals;
•the performance of our collaborators;
•our ability to manufacture any of our product candidates that we are developing
or may develop in the future; and
•the expense and success of filing, prosecuting, defending and enforcing any
patent claims and other intellectual property rights, including potential claims
that we infringe other parties' intellectual property.

A change in the outcome of any of these variables with respect to the
development of a product candidate could mean a significant change in the cost
and timing associated with the development of that product candidate. For
example, if the FDA or another regulatory authority were to require us to
conduct clinical trials or other research and development activities beyond
those that we currently anticipate will be required for the completion of
clinical development of a product candidate, or if we experience significant
delays in enrollment in any of our clinical trials, we could be required to
expend significant additional financial resources and time on the completion of
clinical development.

Research and development activities are central to our business model. Product
candidates in later stages of clinical development generally have higher
development costs than those in earlier stages of clinical development, due to
the increased size and duration of later-stage clinical trials and the
manufacturing that is typically required for those later-stage clinical
trials. We expect research and development costs to increase significantly for
the foreseeable future as our product candidate development programs progress,
but we do not believe that it is possible at this time to accurately project
total program-specific expenses through commercialization. There are numerous
factors associated with the successful commercialization of any of our product
candidates, including future trial design and various regulatory requirements,
many of which cannot be determined with accuracy at this time based on our stage
of development. Additionally, future commercial and regulatory factors beyond
our control will impact our development programs and plans.
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General and administrative expenses



General and administrative expenses consist primarily of salaries and related
costs for personnel, including stock-based compensation and travel expenses for
our employees in executive, operational, finance, legal, investor relations,
business development and human resource functions. Other general and
administrative expenses include facility-related costs, depreciation and other
expenses not allocated to research and development expense and professional fees
for directors, accounting and legal services and expenses associated with
obtaining and maintaining patents. In both 2022 and 2021, we incurred expenses
for intellectual property matters related to deuruxolitinib.

We anticipate that our general and administrative expenses will increase in the
future as our pipeline grows and matures and we seek marketing approval for and
prepare to commercialize our product candidates. In particular, we anticipate an
increase in payroll and related expenses as we seek marketing approval for
deuruxolitinib and prepare for commercial operations, especially as it relates
to the sales, marketing and distribution of deuruxolitinib.

Investment income



Investment income consists of interest income earned on cash equivalents and
investments. The amount of investment income earned in any particular period may
vary primarily as a result of the amount of cash equivalents and investments
held during the period, the types of securities included in our portfolio and
prevailing interest rates during the period. Our current investment policy is to
maintain a diversified investment portfolio of U.S. government-backed securities
and money market mutual funds consisting of U.S. government-backed securities.

Unrealized (loss) gain on marketable equity securities



Unrealized (loss) gain on marketable equity securities consists of changes in
the fair value of shares of common stock of Processa Pharmaceuticals, Inc., or
Processa, held by us.

Unrealized gain on warrant liabilities



Unrealized gain on warrant liabilities consists of changes in the fair value of
warrant liabilities resulting from the 2021 Financing, as discussed further in
Note 13 in the condensed consolidated financial statements appearing elsewhere
in this Quarterly Report on Form 10-Q.

Income taxes



We record a provision or benefit for income taxes on pre-tax income or loss
based on our estimated effective tax rate for the year. As of September 30,
2022, we forecast an ordinary pre-tax loss for the year ended December 31, 2022
and, since we maintain a full valuation allowance on our deferred tax assets, we
did not record an income tax benefit for the nine months ended September 30,
2022.

CRITICAL ACCOUNTING POLICIES AND SIGNIFICANT JUDGMENTS AND ESTIMATES

Our critical accounting policies are those policies which require the most significant judgments and estimates in the preparation of our condensed consolidated financial statements.

There have been no material changes to our critical accounting policies as detailed in our Annual Report on Form 10-K for the fiscal year ended December 31, 2021 filed with the SEC on March 3, 2022.

PENDING AND RECENTLY ADOPTED ACCOUNTING PRONOUNCEMENTS

For detailed information regarding recently issued accounting pronouncements and the actual and expected impact on our condensed consolidated financial statements, see Note 2 in the condensed consolidated financial statements appearing elsewhere in this Quarterly Report on Form 10-Q.


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RESULTS OF OPERATIONS

Discussion of the three and nine months ended September 30, 2022

The following table summarizes our results of operations for the three and nine months ended September 30, 2022.



                                                           Three Months Ended             Nine Months Ended
                                                             September 30,                  September 30,
(Amounts in thousands)                                            2022                           2022

Revenue:


License and research and development revenue            $                   8          $                  29
Operating expenses:
Research and development                                               24,364                         75,708
General and administrative                                              5,250                         15,639
Total operating expenses                                               29,614                         91,347
Loss from operations                                                  (29,606)                       (91,318)
Investment income                                                         785                            951
Unrealized loss on marketable equity securities                          (164)                          (788)
Unrealized gain on warrant liabilities                                     81                            975

Net loss                                                $             (28,904)         $             (90,180)

Research and development expenses



The following table summarizes our research and development expenses for the
three and nine months ended September 30, 2022, with our external research
expenses separately classified by program and our internal research expenses
separately classified by category.

                                                               Three Months Ended             Nine Months Ended
                                                                 September 30,                  September 30,
(Amounts in thousands)                                                2022                           2022
Deuruxolitinib external expenses                            $              18,687          $              58,164
External expenses for other programs                                          127                            294
Employee and contractor-related expenses                                    4,220                         13,254
Facility and other expenses                                                 1,330                          3,996
Total research and development expenses                     $              24,364          $              75,708


Research and development expenses were $24.4 million and $75.7 million for the
three and nine months ended September 30, 2022, respectively. Deuruxolitinib
external expenses increased $3.7 million and $21.0 million for the three and
nine months ended September 30, 2022, respectively, compared to the three and
nine months ended September 30, 2021 primarily due to our Phase 3 clinical
program and open label, long-term extension studies. External expenses for other
programs consisted of costs incurred to develop our research pipeline. Employee
and contractor-related expenses for the three and nine months ended
September 30, 2022 decreased by $0.9 million and $3.0 million, respectively,
compared to the three and nine months ended September 30, 2021 primarily due to
decreases in cash compensation and non-cash stock-based compensation expenses.
Facility and other expenses consisted primarily of rent and maintenance of the
Premises.
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General and administrative expenses

The following table summarizes our general and administrative expenses for the three and nine months ended September 30, 2022.



                                                           Three Months Ended              Nine Months Ended
                                                              September 30,                  September 30,
(Amounts in thousands)                                            2022                            2022
Employee salaries and benefits                          $                2,505          $               7,631
External professional service expenses                                   1,549                          4,402
Facility, technology and other expenses                                  1,133                          3,407
Depreciation and amortization                                               63                            199
Total general and administrative expenses               $                5,250          $              15,639


General and administrative expenses were $5.3 million and $15.6 million for the
three and nine months ended September 30, 2022, respectively. General and
administrative expenses decreased $0.2 million and $0.9 million for the three
and nine months ended September 30, 2022, respectively, as compared to the three
and nine months ended September 30, 2021 primarily due to decreases in non-cash
stock-based compensation expenses.

Investment income



Investment income was $0.8 million and $1.0 million for the three and nine
months ended September 30, 2022, respectively, and consisted of interest income
earned on cash equivalents and investments. Investment income increased $0.8
million and $0.9 million for the three and nine months ended September 30, 2022,
respectively, as compared to the three and nine months ended September 30, 2021
due to the purchase of short-term investments during 2022.

Unrealized loss on marketable equity securities



Unrealized loss on marketable equity securities was $0.2 million and $0.8
million for the three and nine months ended September 30, 2022, respectively.
The unrealized loss on marketable equity securities consisted of changes in the
fair value of shares of common stock of Processa held by us.

Unrealized gain on warrant liabilities



Unrealized gain on warrant liabilities was $0.1 million and $1.0 million for the
three and nine months ended September 30, 2022, respectively. The unrealized
gain on warrant liabilities consisted of changes in the fair value of warrant
liabilities related to the 2021 Financing, as discussed further in Note 13 in
the condensed consolidated financial statements appearing elsewhere in this
Quarterly Report on Form 10-Q.
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Discussion of the three and nine months ended September 30, 2021

The following table summarizes our results of operations for the three and nine months ended September 30, 2021.



                                                           Three Months Ended             Nine Months Ended
                                                             September 30,                  September 30,
(Amounts in thousands)                                            2021                           2021

Revenue:


License and research and development revenue            $                   4          $                  26
Other revenue                                                             539                         32,539
Total revenue                                                             543                         32,565
Operating expenses:
Research and development                                               21,876                         60,560
General and administrative                                              5,462                         16,561
Total operating expenses                                               27,338                         77,121
Loss from operations                                                  (26,795)                       (44,556)
Investment income                                                           4                             44
Unrealized gain on marketable equity securities                           113                            590

Net loss                                                $             (26,678)         $             (43,922)


Revenue

Total revenue was $0.5 million and $32.6 million for the three and nine months
ended September 30, 2021, respectively. The revenue for the nine months ended
September 30, 2021 was primarily attributable to the $32.0 million in cash
received from Vertex in exchange for the removal of the Milestone Obligation.

Research and development expenses



The following table summarizes our research and development expenses for the
three and nine months ended September 30, 2021, with our external research
expenses separately classified by program and our internal research expenses
separately classified by category.
                                                               Three Months Ended             Nine Months Ended
                                                                 September 30,                  September 30,
(Amounts in thousands)                                                2021                           2021
Deuruxolitinib external expenses                            $              14,997          $              37,121
CTP-692 external expenses                                                      12                          2,064
External expenses for other programs                                          392                            960
Employee and contractor-related expenses                                    5,122                         16,304
Facility and other expenses                                                 1,353                          4,111
Total research and development expenses                     $              21,876          $              60,560


Research and development expenses were $21.9 million and $60.6 million for the
three and nine months ended September 30, 2021, respectively. Deuruxolitinib
external expenses primarily related to clinical development, including two Phase
3 clinical trials. CTP-692 external expenses were primarily attributable to the
Phase 2 clinical trial, although development activities related to CTP-692 were
discontinued following such trial failing to meet the primary or other secondary
endpoints. External expenses for other programs consisted of costs incurred to
develop our research pipeline. Employee and contractor-related expenses
consisted primarily of cash compensation and non-cash stock-based compensation
expenses. Facility and other expenses consisted primarily of rent and
maintenance of the Premises.
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General and administrative expenses

The following table summarizes our general and administrative expenses for the three and nine months ended September 30, 2021.



                                                           Three Months Ended              Nine Months Ended
                                                              September 30,                  September 30,
(Amounts in thousands)                                            2021                           2021
Employee salaries and benefits                          $                2,763          $              8,822
External professional service expenses                                   1,488                         4,338
Facility, technology and other expenses                                  1,142                         3,179
Depreciation and amortization                                               69                           222
Total general and administrative expenses               $                5,462          $             16,561


Investment income

Investment income was $4 thousand and $44 thousand for the three and nine months
ended September 30, 2021, respectively, and consisted of interest income earned
on cash equivalents.

Unrealized gain on marketable equity securities

Unrealized gain on marketable equity securities was $0.1 million and $0.6 million for the three and nine months ended September 30, 2021, respectively. Unrealized gain on marketable equity securities consisted of changes in the fair value of shares of common stock of Processa held by us.


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LIQUIDITY AND CAPITAL RESOURCES



We have incurred cumulative losses and negative cash flows from operations since
our inception in April 2006, and as of September 30, 2022, we had an accumulated
deficit of $440.1 million. We anticipate that we will continue to incur losses
for at least the next several years. We expect our expenses to increase in
connection with our ongoing activities, particularly as we seek marketing
approval for deuruxolitinib and conduct our open label, long-term extension
studies and other clinical trials to support the submission of our NDA. As a
result, we will need additional capital to fund our operations, which we may
raise through a combination of equity offerings, debt financings, collaboration
and licensing arrangements and other sources.

As of September 30, 2022, we had cash, cash equivalents and investments of
$148.9 million. Cash in excess of immediate requirements is invested in
accordance with our investment policy, primarily with a view to liquidity and
capital preservation. Currently, our funds are held in U.S. government-backed
securities and money market mutual funds consisting of U.S. government-backed
securities.

We have financed our operations to date primarily through the public offering
and private placement of our equity, debt financing, funding from collaborations
and patent assignments, asset sales and other arrangements. In February 2014, we
completed our initial public offering whereby we sold 6,649,690 shares of common
stock at a price to the public of $14.00 per share, raising aggregate net
proceeds of $83.1 million. In March 2015, we sold 3,300,000 shares of common
stock through an underwritten public offering at a price to the public of $15.15
per share, raising aggregate net proceeds of $46.7 million. In January 2020, we
sold 5,735,283 shares of common stock through an underwritten public offering at
a price to the public of $9.92 per share. At the same time, we sold to a certain
existing investor pre-funded warrants to purchase up to an aggregate of
1,800,000 shares of common stock at a purchase price of $9.919 per pre-funded
warrant, which represents the per share public offering price for the common
stock less the $0.001 per share exercise price for each pre-funded warrant. The
aggregate net proceeds from the January 2020 financing was $70.1 million. In
June 2022, we sold 11,500,000 shares of common stock through an underwritten
public offering at a price to the public of $4.75 per share, raising aggregate
net proceeds of $51.0 million.

In July 2017, we completed the transaction contemplated by the Vertex Agreement.
We received $160.0 million in cash upon closing, with $16.0 million initially
held in escrow, which was released to us in February 2019. In May 2021, we
entered into the Vertex Amendment and received an additional $32.0 million in
cash.

In March 2019, we entered into the ATM Agreement with Jefferies. As of September
30, 2022, we had sold 2,209,687 shares of our common stock pursuant to the ATM
Agreement for aggregate net proceeds of $25.2 million.

In November 2021, we closed the 2021 Financing, raising aggregate net proceeds
of $64.4 million. The 2021 Financing consisted of the sale of (i) 2,253,000
shares of common stock, (ii) 13,997 shares of Series X1 Preferred Stock, (iii)
warrants to purchase up to 16,250 shares of Series X1 Preferred Stock and (iv) a
portion of our right to receive potential future AVP-786 royalties under the
Avanir Agreement. In June 2022, the First Tranche Warrants were amended and a
portion was exercised, resulting in proceeds of $18.9 million. In August 2022,
the remaining First Tranche Warrants were exercised, resulting in proceeds of
$20.9 million.

Management does not believe that our cash, cash equivalents and investments of
$148.9 million as of September 30, 2022 are sufficient to fund our current
operating plan for at least twelve months after the issuance of this Quarterly
Report on Form 10-Q. Based on our current operating plan, we anticipate having
sufficient capital to fund our operations through the second quarter of 2023.
Our history of significant losses, negative cash flows from operations, limited
liquidity resources currently on hand and dependence on our ability to obtain
additional financing to fund our operations after the current capital resources
are exhausted, about which there can be no certainty, raises substantial doubt
about our ability to continue as a going concern. The interim consolidated
financial statements included elsewhere in this Quarterly Report on Form 10-Q
were prepared under the assumption that we will continue as a going concern and
do not include any adjustments relating to the recoverability and classification
of recorded asset amounts or the amounts and classification of liabilities that
might result from the outcome of this uncertainty.
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Cash flows



The following table sets forth the primary sources and uses of cash for each of
the periods set forth below:

                                                              Nine Months Ended September 30,
(Amounts in thousands)                                        2022                        2021
Net cash (used in) provided by:
Operating activities                                  $          (83,185)         $         (28,676)
Investing activities                                             (54,113)                    52,474
Financing activities                                              90,851                      2,664

Net (decrease) increase in cash, cash equivalents and restricted cash

                                       $          (46,447)   

$ 26,462




Operating activities. The cash used for operating activities generally
approximates our net loss adjusted for non-cash items and changes in operating
assets and liabilities. During the nine months ended September 30, 2022, our
operating activities used cash of $83.2 million as compared to cash used in
operating activities of $28.7 million during the nine months ended September 30,
2021. Cash used in operating activities during both the nine months ended
September 30, 2022 and 2021 was primarily driven by our development activities
associated with deuruxolitinib. Cash used in operating activities during the
nine months ended September 30, 2021 also includes $32.0 million in cash
received from Vertex in exchange for the removal of the Milestone Obligation.

Investing activities. Net cash used in or provided by investing activities
consisted of purchases of investments, proceeds from the maturity of investments
and purchases of fixed assets. Net cash used in purchases of investments for the
nine months ended September 30, 2022 was $103.3 million. There were no purchases
of investments for the nine months ended September 30, 2021. Net cash provided
by maturities of investments for the nine months ended September 30, 2022 and
2021 was $49.5 million and $52.7 million, respectively. Purchases of fixed
assets for the nine months ended September 30, 2022 and 2021 was $0.3 million
and $0.2 million, respectively.

Financing activities. Financing activities provided cash of $90.9 million and
$2.7 million for the nine months ended September 30, 2022 and September 30,
2021, respectively. The cash provided by financing activities during the nine
months ended September 30, 2022 was primarily attributable to the $51.0 million
in net proceeds from the 2022 Financing and $39.8 million in net proceeds from
the exercise of First Tranche Warrants. The cash provided by financing
activities during the nine months ended September 30, 2021 was attributable to
the $2.6 million in net proceeds from our at-the-market offering program and
$0.1 million in proceeds from the exercise of stock options.

Operating capital requirements



We do not anticipate commercializing any of our product candidates until 2024 at
the earliest. We anticipate that we will continue to generate losses for the
foreseeable future, and we expect the losses to increase as we continue the
development of, and seek marketing approvals for, our product candidates, and
begin to commercialize any approved products for which we retain
commercialization rights. We are subject to all of the risks incident in the
development of new drug products, and we may encounter unforeseen expenses,
difficulties, complications, delays and other unknown factors that may adversely
affect our business, as well as additional risks stemming from the unproven
nature of deuterated drugs.

To date, we have not generated any revenue from product sales. We do not expect
to generate significant revenue from product sales unless and until we, or our
collaborators, obtain marketing approval of and commercialize one of our current
or future product candidates. Because our product candidates are in various
stages of development and the outcome of these efforts is uncertain, we cannot
estimate the actual amounts necessary to successfully complete development and
commercialization of our product candidates or whether or when we will achieve
profitability.

Until such time, if ever, as we can generate substantial product revenues, we
expect to finance our cash needs through a combination of equity offerings, debt
financings, collaboration and licensing arrangements and other sources. Except
for any obligations of our collaborators to reimburse us for research and
development expenses or to make milestone payments under our agreements with
them, we do not have any additional committed external sources of funds.
Additional capital may not be available on reasonable terms, if at all. If we
are unable to raise additional funds when needed or on favorable terms, we may
be required to delay, limit, reduce or terminate our product development or
future commercialization efforts or grant rights to
                                       43
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develop and market product candidates that we would otherwise prefer to develop
and market ourselves. If we raise additional funds through the issuance of
additional equity or debt securities, it could result in dilution to our
existing stockholders, increased fixed payment obligations and the issuance of
securities with rights senior to those of our common stock. We may become
subject to covenants under any future indebtedness that could limit our ability
to take specific actions, such as incurring additional debt, making capital
expenditures or declaring dividends, which could adversely impact our ability to
conduct our business.

Our expectation with respect to the period of time through which our financial
resources will be adequate to support our operations is a forward-looking
statement and involves risks and uncertainties, and actual results could vary as
a result of a number of factors, including those discussed in the "Risk Factors"
section of this Quarterly Report on Form 10-Q. We have based this estimate on
assumptions that may prove to be wrong, and we could utilize our available
capital resources sooner than we currently expect. If we cannot expand our
operations or otherwise capitalize on our business opportunities because we lack
sufficient capital, our business, financial condition and results of operations
could be materially adversely affected.
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